Validation of commonly used reference genes for sleep-related gene expression studies

dc.contributor.authorLee, Kil Sun [UNIFESP]
dc.contributor.authorAlvarenga, Tathiana Aparecida [UNIFESP]
dc.contributor.authorGuindalini, Camila [UNIFESP]
dc.contributor.authorAndersen, Monica Levy [UNIFESP]
dc.contributor.authorCastro, Rosa Maria Rodrigues Pinto Santos [UNIFESP]
dc.contributor.authorTufik, Sergio [UNIFESP]
dc.contributor.institutionAFIP
dc.contributor.institutionUniversidade Federal de São Paulo (UNIFESP)
dc.date.accessioned2016-01-24T13:52:33Z
dc.date.available2016-01-24T13:52:33Z
dc.date.issued2009-05-15
dc.description.abstractBackground: Sleep is a restorative process and is essential for maintenance of mental and physical health. in an attempt to understand the complexity of sleep, multidisciplinary strategies, including genetic approaches, have been applied to sleep research. Although quantitative real time PCR has been used in previous sleep-related gene expression studies, proper validation of reference genes is currently lacking. Thus, we examined the effect of total or paradoxical sleep deprivation (TSD or PSD) on the expression stability of the following frequently used reference genes in brain and blood: beta-actin (b-actin), beta-2-microglobulin (B2M), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and hypoxanthine guanine phosphoribosyl transferase (HPRT).Results: Neither TSD nor PSD affected the expression stability of all tested genes in both tissues indicating that b-actin, B2M, GAPDH and HPRT are appropriate reference genes for the sleep-related gene expression studies. in order to further verify these results, the relative expression of brain derived neurotrophic factor (BDNF) and glycerol-3-phosphate dehydrogenase1 (GPD1) was evaluated in brain and blood, respectively. the normalization with each of four reference genes produced similar pattern of expression in control and sleep deprived rats, but subtle differences in the magnitude of expression fold change were observed which might affect the statistical significance.Conclusion: This study demonstrated that sleep deprivation does not alter the expression stability of commonly used reference genes in brain and blood. Nonetheless, the use of multiple reference genes in quantitative RT-PCR is required for the accurate results.en
dc.description.affiliationAFIP, BR-04024002 São Paulo, Brazil
dc.description.affiliationUniversidade Federal de São Paulo, Dept Psychobiol, BR-04024002 São Paulo, Brazil
dc.description.affiliationUnifespUniversidade Federal de São Paulo, Dept Psychobiol, BR-04024002 São Paulo, Brazil
dc.description.sourceWeb of Science
dc.description.sponsorshipAssociacao Fundo de Incentivo a Psicofarmacologia (AFIP)
dc.description.sponsorshipConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
dc.description.sponsorshipFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)
dc.description.sponsorshipAFIP
dc.description.sponsorshipIDFAPESP: 98/14303-3
dc.description.sponsorshipIDFAPESP: 06/58274-5
dc.format.extent8
dc.identifierhttp://dx.doi.org/10.1186/1471-2199-10-45
dc.identifier.citationBmc Molecular Biology. London: Biomed Central Ltd, v. 10, 8 p., 2009.
dc.identifier.doi10.1186/1471-2199-10-45
dc.identifier.fileWOS000266807500001.pdf
dc.identifier.issn1471-2199
dc.identifier.urihttp://repositorio.unifesp.br/handle/11600/31521
dc.identifier.wosWOS:000266807500001
dc.language.isoeng
dc.publisherBiomed Central Ltd
dc.relation.ispartofBmc Molecular Biology
dc.rightsAcesso aberto
dc.titleValidation of commonly used reference genes for sleep-related gene expression studiesen
dc.typeArtigo
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