Machine Learning Techniques for the Automated Classification of Adhesin-Like Proteins in the Human Protozoan Parasite Trypanosoma cruzi
Gonzalez, Ana M.
Azuaje, Francisco J.
Ramirez, Jose L.
Silveira, Jose F. da [UNIFESP]
Dorronsoro, Jose R.
Is part ofIeee-acm Transactions On Computational Biology and Bioinformatics
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This paper reports on the evaluation of different machine learning techniques for the automated classification of coding gene sequences obtained from several organisms in terms of their functional role as adhesins. Diverse, biologically-meaningful, sequence-based features were extracted from the sequences and used as inputs to the in silico prediction models. Another contribution of this work is the generation of potentially novel and testable predictions about the surface protein DGF-1 family in Trypanosoma cruzi. Finally, these techniques are potentially useful for the automated annotation of known adhesin-like proteins from the trans-sialidase surface protein family in T. cruzi, the etiological agent of Chagas disease.
CitationIeee-acm Transactions On Computational Biology and Bioinformatics. Los Alamitos: Ieee Computer Soc, v. 6, n. 4, p. 695-702, 2009.
SponsorshipSpanish Ministerio de Educacion y Ciencia
Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
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